DVDs
Data DVD+Rs are distributed on a limited basis to help you share the video tutorials when internet connectivity is not possible. Please contact David to see whether DVDs are available.
You can use the following list of version numbers to determine differences between DVDs. Revision numbers containing the Greek letter α are rough. These versions need additional edits for accuracy, clarity, and completeness. The active version history below indicates that the video course is a continuing work, often updated during summers.
Please note that these discs contain MP4 files (video codec: H.264, audio codec: AAC). The format of these discs does not conform to DVD Video or BluRay Disc standards. The videos should play on Windows, Mac, and Linux computers. However, please refer to instruction manuals to determine compatibility with settop consoles.
Revision 20150716α
Total run time: 15h05m13s(1.68 GO)
Average run time: 7m18s per video

Replaced 0309 MA 1a Mass action.mp4 (12m50s) with version with new voice recording (13m02s).

Replaced 0310 MA 1b Cooperativity.mp4 (12m27s) with version with new voice recording (11m58s).

Replaced 0311 MA 1c Bistability.mp4 (06m52s) with version with new voice recording (6m32s).
Revision 20150128α
Total run time: 15h05m49s(1.68 GO)
Average run time: 7m18s per video
Revisions made from the beginning of October (previous revisions October 6) into late January:

Added 1108 Macroscopic irreversibility a Microstates explored.mp4 (10m17s).

Added 1109 Macroscopic irreversibility b Microscopic reversibility.mp4 (05m06s).

Added 1110 Macroscopic irreversibility c Phase space volumes.mp4 (11m08s).

Added 1111 Macroscopic irreversibility d Macroscopic irreversibility.mp4 (11m44s).

Replaced 0309 MA 1a Mass action.mp4 (12m50s) with same file name and duration, but deessed.

Replaced 0310 MA 1b Cooperativity.mp4 (12m27s) with same file name and duration, but deessed.

Replaced 0311 MA 1c Bistability.mp4 (06m52s) with same file name and duration, but deessed.

Replaced 1101 Stat phys a Postulate.mp4 (06m35s) with same file name, but with some audio in the beginning edited to reduce the length of the file to (06m27s), and deessed.

Replaced 1102 Stat phys b Direct.mp4 (02m21s) with same file name and duration, but deessed.

Replaced 1103 Stat phys c Bath.mp4 (11m36s) with same file name, but slightly shortened (11m35s) to remove a trailing black screen, and deessed.

Replaced 1104 Stat phys d Expectation.mp4 (05m27s) with same file name and duration, but deessed.

Replaced 1105 Ideal chain a.mp4 (04m07s) with same file name and duration, but deessed.

Replaced 1106 Ideal chain b Partition.mp4 (08m41s) with same file name and duration, but deessed.

Replaced 1107 Ideal chain c Expectation.mp4 (16m14s) with same file name and duration, but deessed.

Replaced 0212 Partials.mp4 (06m14s) with same file name, longer duration (extended final silence by a couple seconds to allow moment to land), and deessed.

Replaced 0000 Welcome.mp4 (01m48s) with same file name and duration, but deessed.

Replaced 0701 LA 1a Customer dynamics.mp4 (05m29s) with same file name and duration, but deessed.

Replaced 0702 LA 1b Vectors.mp4 (09m42s) with same file name and duration, but deessed.

Replaced 0703 LA 1c Operators.mp4 (13m25s) with same file name and duration, but deessed.

Replaced 0704 Solution.mp4 (25m11s) with same file name and duration, but deessed.

Replaced 0802 DE 3a mRNAProtein.mp4 (10m17s) with same file name and duration, but deessed.

Replaced 0803 DE 3b Eigenvectors.mp4 (16m17s) with same file name and duration, but deessed.

Replaced 0804 DE 3c LSA.mp4 (11m48s) with same file name and duration, but deessed.

Replaced 0706 Euler 2 Complex exponentials.mp4 (04m24s) with same file name and duration, but deessed.

Replaced 0801 DE 1 Numerical integration.mp4 (10m16s) with same file name and duration, but deessed.

Replaced 0501 Uncer a Quadrature.mp4 (07m56s) with same file name and duration, but deessed.

Replaced 0705 Quasispecies.mp4 (12m58s) with same file name and duration, but deessed.
Revision 20140929α
Total run time: 14h27m40s(1.56 GO)
Average run time: 7m14s per video
Revisions made during the end of August and into the end of September (since the 20140728 update) are listed:

Replaced 0101 Numbers.mp4 (6m57s) with

0101 Numbers a Distinct manipulatives vs addresses.mp4 (4m07s)

0102 Numbers b BoseEinstein.mp4 (4m40s)

0103 Numbers c How to illustrate.mp4 (2m27s)

0104 Numbers d Infinity is not a number.mp4 (1m42s)
Adjusted subsequent track numbers accordingly.

Replaced 0301 Stochasticity.mp4 (10m27s) with

0301 Stochasticity a Incommensurate periods.mp4 (5m15s)

0302 Stochasticity b Practical unpredictability.mp4 (4m29s)

0303 Stochasticity c Fundamental indeterminism.mp4 (5m03s)

0304 Stochasticity d Markov processes.mp4 (4m46s)
Adjusted subsequent track numbers accordingly.

Replaced 0305 Protein translation.mp4 (18m12s) with

0305 Protein dynamics a Model.mp4 (8m56s)

0306 Protein dynamics b DE & flowchart.mp4 (9m50s)

0307 Protein dynamics c Slopefield solution.mp4 (4m12s)

0308 Protein dynamics d Analytic solution & rise time.mp4 (11m02s)
Adjusted subsequent track numbers accordingly.

Replaced 0410 CLT b Central limit theorem.mp4 (13m00s) with

0410 CLT a Central limit theorem statement.mp4 (6m37s)

0411 CLT b Optional specialcase derivation.mp4 (9m01s)

0412 CLT c Properties of Gaussians.mp4 (3m50s)
Rerecorded to improve audio narration quality and segmented video into three parts for easier navigation (and to make it easier to skip the optional specialcase derivation in the middle track).

Replaced 0411 CLT c Pervasive Gaussians.mp4 (13m10s) with

0411 Pervasive Gaussians a Physics labs.mp4 (8m25s)

0412 Pervasive Gaussians b Lognormal biology.mp4 (10m35s)
Segmented for easier navigation; improved audio.

Replaced

0502 Uncer b Sample estimates.mp4 (9m20s)

0503 Uncer c Sqrt(n) factor.mp4 (5m27s)
with

0502 Uncer b Sample estimates.mp4 (9m21s)

0503 Uncer c Sqrt(n) factor.mp4 (5m27s)
Added "(a.s.)" (almost sure) to expressions involving limits of random variables; very minor audio adjustments.

Replaced 0506 Uncer f Curve fit.mp4 (18m35s) with

0506 Curve fit a Chisquared.mp4 (8m18s)

0507 Curve fit b Minimizing chisquared.mp4 (13m37s)

0508 Curve fit c Checklist.mp4 (3m44s)
No adjustment of video track numbers was needed, but the file name for supplemental handout 0506 Uncer f Supplemental exercise.pdf was changed to 0508 Curve fit c Supplemental exercise.pdf.

Replaced 0601 Master.mp4 (7m18s) with 0601 Master.mp4 (7m17s) to fix some minor audio issues (still not great) and to fix a misaligned title on a coversheet. Also edited out a word that made a sentence not quite make sense.

Replaced 0602 SSA.mp4 (16m29s) with 0602 SSA.mp4 (16m29s) to fix a misaligned title on a coversheet.

Replaced 0707 LA 2 Rotation mtx.mp4 (8m51s) with

0707 LA 2 Rotations a Rotation mtx.mp4 (4m51s)

0708 LA 2 Rotations b Complex eigenvalues.mp4 (8m43s)
Segmented for easier navigation; improved audio.

Replaced 0806 DE 4b Almost LSA.mp4 (3m52s) with 0806 DE 4b Almost LSA.mp4 (5m55s) to improve audio and describe an almost linear system.

Replaced 0807 DE 5 Oscillations.mp4 (8m55s) with

0807 DE 5 Oscillations a Romeo & Juliet.mp4 (7m46s)

0808 DE 5 Oscillations b Twisting nullclines.mp4 (3m41s)

0809 DE 5 Oscillations c Time delays.mp4 (2m31s)

0810 DE 5 Oscillations d Stochastic excitation.mp4 (3m48s)
Segmented for easier navigation; improved audio.

Replaced 0901 Dyn heterogeneity.mp4 (17m35s) with

0901 Introduction to physical oncology.mp4 (1m54s)

0902 Dynamic heterogeneity a Stochastic biochemistry.mp4 (6m23s)

0903 Dynamic heterogeneity b Phenotypic interconversion.mp4 (4m54s)

0904 Dynamic heterogeneity c Metronomogram.mp4 (8m09s)
No adjustment of track numbers was needed because chapter 9 contained only a single track before this revision was made.
Revision 20140728α
Total run time: 13h17m52s(1.48 GO)
Average run time: 8m04s per video
Recent edits were integrated into the DVD folder, which was last updated 20131228, in the following order:

Replaced 0102 Variables.mp4 (14m31s) with a more granular set of five videos for easier navigation, improved vocal narration quality, and mention of the concept of the range of a function. Animations were improved particularly in part b.

0102 Algebra a Variables.mp4 (5m42s)

0103 Algebra b Functions.mp4 (4m45s)

0104 Algebra c Composite functions.mp4 (2m33s)

0105 Algebra d Inverse functions.mp4 (2m55s)

0106 Algebra e Squareroot function.mp4 (5m15s)
Adjusted subsequent track numbers accordingly.

Replaced 0108 Geometry a Euclidean.mp4 (5m37s) and 0109 Geometry b Trigonometry.mp4 (12m34s) with four videos for easier navigation, and to first introduce sine and cosine in relation to the unit circle, rather than using right triangles.

0108 Geometry a Euclidean.mp4 (5m59s)

0109 Geometry b Sinea nd cosine on unit circle.mp4 (3m04s)

0110 Geometry c Approximating pi.mp4 (5m12s)

0111 Geometry d Right triangles & trig identities.mp4 (6m11s)
Adjusted subsequent track numbers accordingly.

Replaced 0201 Limits.mp4 (14m12s) with six videos for easier navigation, clearer content/animations, and higher quality vocal narration.

0201 Limits a Limit of function.mp4 (7m37s)

0202 Limits b Improper limits.mp4 (3m57s)

0203 Limits c Limits at infinity.mp4 (3m29s)

0204 Limits d Infinite limits at infinity.mp4 (3m32s)

0205 Limits e Limits do not always exist.mp4 (2m40s)

0206 Limits f Limit proof.mp4 (6m59s)
Adjusted subsequent track numbers accordingly.

Replaced 0401 Statistics.mp4 (19m07s) with five videos for easier navigation and to improve quality of vocal narration.

0401 Stat a Distributions & averages.mp4 (5m54s)

0402 Stat b Identities involving averages.mp4 (3m43s)

0403 Stat c Variance.mp4 (5m33s)

0404 Stat d Statistical independence.mp4 (6m26s)

0405 Stat e Identities from independence.mp4 (7m20s)
Adjusted subsequent track numbers accordingly.

Replaced 0406 Prob a Bernoulli.mp4 (9m27s) and 0407 Prob b Poisson.mp4 (7m53s) with three videos for easier navigation and higher quality vocal narration.

0406 Prob a Bernoulli.mp4 (3m49s)

0407 Prob b Binomial.mp4 (7m18s)

0408 Prob c Poisson.mp4 (8m13s)
Adjusted subsequent track numbers accordingly.

Replaced 0409 Prob c Stirling.mp4 (10m16s) for improved quality of vocal narration. Renamed to group more explicitly with other videos related to the central limit theorem.

0409 CLT a Stirling.mp4 (11m22s)

Renamed 0410 Prob b CLT.mp4 (13m00s) and 0411 Prob e CLT Pervasive.mp4 (13m10s) to group these videos more obviously with the video describing Stirling's approximation (renamed in the revision immediately above).

0410 CLT b Central limit theorem.mp4

0411 CLT c Pervasive Gaussians.mp4

Replaced 1001 CA a Lattice automata.mp4 (3m43s) for improved quality of vocal narration.

1001 CA a Lattice automata.mp4 (5m46s)
Revision 20131228α
Total run time: 12h39m49s (1.42 GO)

Replaced 0223 Euler 1g Over x.mp4 (9m17s) with 0223 Euler 1g Over x.mp4 (3m46s). This video was edited to replace a long and arduous algebraic demonstration that the integral of 1/x dx = ln(x) + C with a much more graphical and faster demonstration based on the fact that x and y are exchanged when converting the plot of exp(x) into a plot of its inverse function ln(x).
Revision 20130914α
Total run time: 12h45m20s (1.42 GO)

Replaced 0216 Sep var.mp4 (3m15s) with 0216 Sep var.mp4 (5m48s). This video was edited for better audio quality, better quality of speech practice, and minor edits to visuals.
Revision 20130801α
Total run time: 12h42m47s

Replaced 0208 Taylor.mp4 (17m04s) with
 0208 Power series a Curvature.mp4 (6m54s)
 0209 Power series b General formula.mp4 (13m51s)
 0210 Power series c Sine.mp4 (5m06s)
 0211 Power series d pi.mp4 (4m50s)

Replaced 0209 Integrals.mp4 (17m08s) with
 0212 Integrals a Area under curve.mp4 (10m02s)
 0213 Integrals b Fundamental thm 1.mp4 (3m52s)
 0214 Integrals c Fundamental thm 2.mp4 (9m19s)
 0215 Integrals d Change of variables.mp4 (6m28s)

Shifted track numbers in chapter 2 (calculus) to accommodate changes listed above.
Revision 20130715α
Total run time: 12h16m33s

Video 0308 EGT 2a Repeated games.mp4 (19m20s) added. This video derives population dynamics equations in such a way so that evolutionary game theory models can be understood as describing populations of cells repeatedly playing games and being subject to game outcomes.

Video 0309 EGT 2b Time and computation.mp4 (10m58s) added. This video explains that, in some situations, it is possible for repeated simple interactions to achieve results that seem to be related to results that can be achieved through sophisticated computation.
Revision 20130523α
Total run time: 11h46m14s

Video 36 Uncer b Sample estimates.mp4 (now 15m37s, previously 14m52s) rerecorded (1) to correct a conceptual error regarding statistical biases in sample estimates of standard deviations (Bessel's correction ensures an unbiased sample variance, not an unbiased sample estimate of standard deviation) and (2) to reduce echo.

Then rerecorded 36 Uncer b Sample estimates.mp4 (14m52s) again, split into
 36 Uncer b Sample estimates.mp4 (9m20s)
 37 Uncer c Sqrt(n) factor.mp4 (5m27s)
 38 Uncer d Error bar overlap.mp4 (3m23s)
 Also rerecorded 37 Uncer c Illusory sample size.mp4 (5m21s), which became 39 Uncer e Illusory sample size.mp4 (6m47s)
These changes address confusion surrounding the words "sample" and "measurements." Track 39 was also edited to include a remark regarding logarithmic scaling along the vertical axis.

Track listings changed from linear format to DVDstyle titlechapter format.

Euler's number section rerecorded to reduce echo:
 0211 Euler 1a Compound.mp4 (was 6m44s, is now 7m10s)
 0212 Euler 1b To zero.mp4 (was 1m54s, is now 2m06s)
 0213 Euler 1c Multiply.mp4 (was 5m49s, is now 6m05s)
 0214 Euler 1d Add.mp4 (was 5m52s, is now 5m57s)
 0215 Euler 1e Jackson.mp4 (was 1m54s, is now 2m20s)
 0216 Euler 1f Log.mp4 (was 4m34s, is now 5m06s)
 0217 Euler 1g Over x.mp4 (was 7m32s, is now 9m17s)

Replaced 0103 Quadratic.mp4 (4m08s) with newer 0103 Quadratic.mp4 (6m04s). Newer version was recorded with less echo.

Rerecorded and replaced 0108 Combinatorics.mp4 (13m28s) to reduce echo and to make navigation easier. Replacement files:
 0108 Combinatorics a Permutations.mp4 (3m20s)
 0109 Combinatorics b Combinations.mp4 (6m59s)
 0110 Combinatorics c Binomial.mp4 (5m05s)

Rerecorded and replaced 0202 Differenation.mp4 (27m04s) with the following videos for improved vocal narration quality and to make navigation easier:
 0202 Differenation a Derivative.mp4 (08m47s)
 0203 Differenation b Power rule.mp4 (07m23s)
 0204 Differenation c Chain rule.mp4 (03m54s)
 0205 Differenation d Product rule.mp4 (04m25s)
 0206 Differenation e Sine.mp4 (08m27s)
Revision 20130327α
Total run time: 11h28m04s

Video 09 Differentiation.mp4 edited to remove 13 seconds of black screen at end and to clean up minor nuisances in audio.

Added videos 40 Stoch transcription.mp4 (08m13s) and 41 Stoch transcription & degr.mp4 (14m07s) and bumped track numbers accordingly.

Replaced video 06 Sums.mp4 (07m19s) with 06 Sums a Notation.mp4 (04m05s)

Added video 07 Sums b Infinite series.mp4 (04m29s) and bumped track numbers accordingly. Note that 06 Sums a Notation.mp4 and 07 Sums b Infinite Series.mp4 are 960x720 (recorded at 1024x768) to compensate for chroma subsampling that makes red subscripts hard to read. There are similar artifacts elsewhere, but in these videos on summation notation, the artifacts are prevalent.

Minor revision to video 57 Dyn heterogeneity.mp4 (now 17m35s instead of 17m40s). License converted from CCBYNCSA to CCBYSA.
Revision 20130201α1
Total run time: 11h04m45s
Added PDF of MatLab exercise to accompany video 37 Uncer d Curve fit.mp4
Revision 20130201α
Total run time: 11h04m45s
First disc version

© Copyright 20112015 David Liao. These videos and slides are open course ware made available under a Creative Commons license (CC BYSA 4.0). The lightbox and social sharing effects are scripts by Stéphane Caron (CC BY 2.5).
